DoMix Scientific Software
Offers software for sequence alignment, phylogenetic tree visualization, contig assembly and sequence proof reading
JaMBW
Java based biologist's workbench by Luca I.G.Toldo.
BioKin, Ltd.
Offers script-driven programming for data analysis in viral dynamics, enzyme kinetics, receptor binding and drug discovery screening. Includes demo download, technical support and contacts for consulting in Pullman, Washington.
Blue Tractor Software
Java based commercial software for DNA and Protein sequence analysis. Demo available.
Argo
Software developed by the Broad Institute for visualizing and manually annotating whole genomes. Free for research and educational users
Cognia
Provides tools research analysis in genomics, signal transduction and molecular biology.
FinchTV
Free DNA sequencing chromatogram trace viewer. Runs on Window, MacOS X, Linux & Solaris. Uses QT library.
Insilico Biotechnology
Offering predictive software tools and services for metabolic engineering and drug discovery. Based in Germany.
EnzymeX
Free MacOS X program for molecular biologists that can be used to determine which restriction enzymes cut a DNA sequence. Includes list of all commercially available RE.
Mekentosj software
Free MacOS X programs for molecular biologists. Offers 4Peaks - a DNA sequencing trace viewer, iRNAi - RNAi design, and LabAssistant - lab timer/organizer.
QualTrace DNA Sequencing Software
Analyzes the raw data contained within ABI trace files to identify nine major problems with either the sequencing reactions or the DNA sequencing instrument.
DNA Sequencing Software
software to improve the quality of DNA sequencing traces collected on the ABI 3700 and 3730 DNA sequencers.
Phenosystems
Offers the Gensearch software to locate and analyse potential mutation locations.
SoftZymics
Package for statistical analysis of steady-state enzyme kinetic data, and presentation graphics, for Macintosh or Windows based computers. Previews, price and form to order from Princeton, NJ.
Molecular Biology Software Links
Links to biological software for DNA sequencing, molecule modeling, polymerase chain reaction and taxonomy.
eLABorate Packages
Programs designed as educational exercise for planning experiments in enzyme kinetics, protein-ligand binding, protein purification and related projects from the University of York, UK.
Rutgers Online Software Exchange
Offers free open source molecular biology software developed by scientists at Rutgers University, New Jersey.
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